CONTIGuator web server

An online bacterial genomes finishing tool for structural insights on draft genomes

Input files

Maximum file size is 50MB

Contig file (FASTA)

Reference file(s) (FASTA)

Use ONE reference genome

If you wish to use more than one reference genome you should run one analysis for each reference

PTT files (optional)

Contigs profiling

Blast e-value

Use blastn

Blast threads

Contig length threshold

Contig coverage threshold (%)

Hit length threshold

Multiple replicon threshold

Gaps size for overlapping contigs

Do not use N to separate the contigs

Primer picking

Look for PCR primers

Ready to go?

Your email

Give this job a name (optional)

the submitted genome data will be deleted right after job completion

the provided email may be used to monitor the server usage (and will remain anonymous)